All modules for which code is available

• config
• main
• scripts.ai_assistant.agent_graph
• scripts.ai_assistant.analytical_engine
• scripts.ai_assistant.cli
• scripts.ai_assistant.file_access
• scripts.ai_assistant.keystore
• scripts.ai_assistant.phi_safe
• scripts.ai_assistant.sandbox.limits
• scripts.ai_assistant.sandbox.replicate
• scripts.ai_assistant.sandbox.runner
• scripts.ai_assistant.study_knowledge
• scripts.ai_assistant.tool_cache
• scripts.ai_assistant.ui.chat
• scripts.ai_assistant.ui.model_policy
• scripts.ai_assistant.ui.providers
• scripts.ai_assistant.ui.shell
• scripts.ai_assistant.ui.state
• scripts.ai_assistant.ui.wizard
• scripts.ai_assistant.web_ui
• scripts.artifact_versions
• scripts.extraction.build_variables_reference
• scripts.extraction.cleanup_propagation
• scripts.extraction.dataset_cleanup
• scripts.extraction.dataset_pipeline
• scripts.extraction.dedup
• scripts.extraction.extract_pdf_data
• scripts.extraction.io.clinical_dates
• scripts.extraction.io.file_discovery
• scripts.extraction.io.file_io
• scripts.extraction.io.jsonl_reader
• scripts.extraction.load_dictionary
• scripts.extraction.pdf_pipeline
• scripts.lint_doc_freshness
• scripts.security.kanon_gate
• scripts.security.phi_allowlist
• scripts.security.phi_gate
• scripts.security.phi_scrub
• scripts.security.secure_env
• scripts.utils.errors
• scripts.utils.integrity
• scripts.utils.lineage
• scripts.utils.llm_capabilities
• scripts.utils.log_hygiene
• scripts.utils.logging_system
• scripts.utils.secure_staging
• scripts.utils.snapshots
• scripts.utils.step_cache
• scripts.utils.telemetry